This is my personal blog. I’ll do my best to keep it updated but I make no promises! Posts are likely to be a mix of programming, data visualisation, statistics and personal topics.

Pages

Blog posts

Package sites

Here are some links to R packages I’ve written or contributed to:

  • CRAN packages:

    Package Description Version Downloads
    heatmaply Interactive cluster heatmaps in R. CRAN status
    contrast Contrasts for linear models in R. CRAN status
    bayefdr Bayesian estimation and optimisation of expected FDR and expected FNR. CRAN status
  • Bioconductor:

    Package Description Devel Release Rank
    scater Single cell analysis toolkit.
    BASiCS Bayesian model for analysis of single-cell sequencing data.
    snifter R wrapper for the python openTSNE library implementing fast interpolated t-SNE.
    densvis Density-preserving non-linear dimensionality reduction methods.
  • Misc:
  • Teaching materials:
    I have also contributed to and maintain some teaching materials:

    Name Website Source
    High dimensional statistics with R Carpentries Incubator GitHub
    Orchestrating single cell analysis (landing) Bioconductor GitHub
    Orchestrating single cell analysis (multisample) Bioconductor GitHub