This is my personal blog. I’ll do my best to keep it updated but I make no promises! Posts are likely to be a mix of programming, data visualisation, statistics and personal topics.

Pages

• About me

• Curriculum vitae

Blog posts

• Immunity passports and Bayes theorem (08 April 2020) - stats and Bayes by dummies

• Bayesian regression by dummy (22 March 2020) - stats and Bayes by dummies

• Modelling disease mortality (30 January 2020) - stats and Bayes by dummies

• Visualising data with R, htmlwidgets, and Javascript (28 November 2019) - programming and data visualisation

• Jekyll and Rmarkdown (the wrong way) (14 November 2018) - programming and data visualisation

• Dulce Et Decorum Est (11 November 2018) - personal

Package sites

Here are some links to R packages I’ve written or contributed to:

• CRAN packages:

  Package	Description	Version	Downloads
  heatmaply	Interactive cluster heatmaps in R.
  contrast	Contrasts for linear models in R.
  iheatmapr	Interactive complex heatmaps in R.
  bayefdr	Bayesian estimation and optimisation of expected FDR and expected FNR.

• Bioconductor:

  Package	Devel	Release	Issues	Pull requests
  scater
  snifter
  densvis
  BASiCStan

• Misc:
  • heatmaplyExamples:
    Vignettes demonstrating the utility of heatmaply for various applications
  • plotlyutils:
    Some functions for creating nice interactive plots using the plotly R and JS libraries.
  • nalar:
    A personal R library I use for common analysis tasks. May be published on CRAN eventually.
  • plotlyvignettes:
    Vignettes relating to my plotlyutils package. Was used as the basis for a talk at an Edinburgh Bioinformatics meeting (2018-11-08).

• Teaching materials:
  I have also contributed to and maintain some teaching materials:

  Name	Website	Source
  High dimensional statistics with R	Carpentries Incubator	GitHub
  Orchestrating single cell analysis (landing)	Bioconductor	GitHub
  Orchestrating single cell analysis (multisample)	Bioconductor	GitHub